Chipbase 2.0

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August undefined, 2024

WebName Description type Link References ChIPBase ChIPBase a database for Transcription factor-binding sites, motifs (~1290 transcription factors) and decoding the transcriptional … http://plantpan.itps.ncku.edu.tw/

Rapamycin targets STAT3 and impacts c-Myc to suppress tumor …

WebMar 29, 2024 · Decoded the regulatory mechanisms mediated by transcriptional regulators and epitranscriptomic codes and developed integrative analysis platforms (ChIPBase and dreamBase) for facilitating study of ... WebAn ensemble model of binary node interactions (valid for an abstract average cell) was derived from publicly available data. Transcription factor binding data was derived from ChIPBase 2.0 (Zhou et al., 2024), and … screw vs centrifugal chiller

ChIPBase v2.0: decoding transcriptional regulatory …

http://rna.sysu.edu.cn/chipbase/ WebMar 17, 2024 · A rapamycin analog containing an alkyne group (alk-rapa) was synthesized by a one-step reaction between rapamycin and 3-(but-3-yn-1-yl)-3-(2-iodoethyl)-3H-diazirine at room temperature overnight (Figures 1 A and S1 A).The azide-rhodamine or azide-biotin was reacted with alk-rapa by a copper-catalyzed azide-alkyne cycloaddition (CuAAC) … WebFind out what works well at CHIPBASE from the people who know best. Get the inside scoop on jobs, salaries, top office locations, and CEO insights. Compare pay for popular roles and read about the team’s work-life balance. Uncover why CHIPBASE is the best company for you. ... 2,0. on 19 July 2024. screw vise kit

LincSNP 2.0: an updated database for linking disease …

Rapamycin targets STAT3 and impacts c-Myc to suppress tumor …

WebNov 18, 2024 · ChIPBase has identified ∼151 187 000 regulatory relationships between ∼171 600 genes and ∼3000 regulators by analyzing ∼55 000 ChIP-seq datasets, which … WebHere, we have updated the LncRNADisease database to version 2.0 by integrating comprehensive experimentally supported and predicted ncRNA-disease associations curated from manual literatures and other resources. The new developments in LncRNADisease v2.0 include (I) over 40-fold ncRNA-disease associations enhancement … screw v united statesWebNational Center for Biotechnology Information screw vs bolt difference

"WebChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data Ke-Ren Zhou 0 Shun Liu 0 Wen-Ju Sun 0 Ling-Ling Zheng 0 Hui Zhou 0 Jian-Hua Yang 0 Liang-Hu Qu 0 0 Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat … " - Chipbase 2.0

Chipbase 2.0

MAD2L1 is transcriptionally regulated by TEAD4 and promotes cell ...

WebChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other … WebNational Center for Biotechnology Information

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WebstarBase v2.0: decoding Interaction Networks of lncRNAs, miRNAs, ceRNAs ... WebDownload scientific diagram System overview of ChIPBase v2.0 core framework. All results generated by ChIPBase v2.0 are deposited in MySQL relational databases and …

WebJan 4, 2024 · ChIPBase v2.0 consists of nine web-based modules and tools. The LncRNA, miRNA, OtherNcRNA, Protein and Regualtor modules are mainly developed to … WebThe current release of ChIPBase includes high-throughput sequencing data that were generated by 543 ChIP-Seq experiments in diverse tissues and cell lines from six organisms. By analysing millions of TFBSs, we identified tens of thousands of TF-lncRNA and TF-miRNA regulatory relationships.

WebOct 26, 2024 · Approximately 10% of c-Myc-regulated genes (download from ChIPBase v.2.0) were inhibited by rapamycin. View Large Image Figure Viewer; Download Hi-res image Download (PPT) To investigate the relationship between STAT3 and c-Myc, we used data from a STAT3 chromatin ... WebNov 4, 2013 · ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res. 2013; 41:D177–D187. [Europe PMC free article] [Google Scholar] 16. Liu X, Wang S, Meng F, Wang J, Zhang Y, Dai E, Yu X, Li X, Jiang W. SM2miR: a database of the experimentally …

WebDownload Table The library statistics of ChIP-seq datasets in ChIPBase v2.0 from publication: ChIPBase v2.0: Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding ...

pay oath ticket nyWebThe current PlantPAN release (version 3.0) contains 17,230 TFs and 4,703 matrices of TF binding sites among 78 plant species. For optimal use of this database, we recommend to use Google Chrome or Firefox browser and … pay oath finesWebOct 7, 2024 · With the introduction of USB 3.2 in 2024, we saw yet another 10 GBps tier and a faster 20 Gbps tier, both with dual-lane capabilities. It was at this time that the USB-IF decided to lump all 3.x ... screw vs roots superchargerWebmiRBase is the central online repository for microRNA (miRNA) nomenclature, sequence data, annotation and target prediction. The current release (10.0) contains 5071 miRNA loci from 58 species, expressing 5922 distinct mature miRNA sequences: a growth of over 2000 sequences in the past 2 years. miRBase provides a range of data to facilitate ... pay oath violation onlineWebNucleicAcidsResearch,2024,Vol.45,Databaseissue D75 man lncRNAs. Until now, no specialized resource has beendevotedtocollecting,storinganddistributingdisease- screw vs glueWebDec 16, 2024 · GEO (GSE31189, GSE87304, GSE13507, GSE31684, GSE124305), ChIPBase 2.0, and starBase 2.0 databases were used to predict the correlation between … screw vs nail framingWebThis page allows you to search LncRNA-Disease or CircRNA-Disease Associations of interest by the keywords. For Keyword Search, you may use different types of keyword as input for database searching, the LncRNA Symbol for instance, you can use Official gene symbol (e.g. ' H19 ') etc. For Advanced Filter, you can use different combinations of the ... pay oath ticket