Genome-wide expression
WebApr 25, 2024 · Identification of the daylily SWEET gene family. A total of 38 SWEET gene sequences were retrieved from the daylily genome Through the screening, 19 of these sequences were retained and named as HfSWEET1–HfSWEET17 (GenBank accession Nos. OM264165–OM264183, Additional file 1: Table S1) according to their identity … WebThe development of genome-wide gene expression profiling technologies over the past two decades has produced great opportunity for researchers to explore the transcriptome and to better understand biological systems and their perturbation. In this chapter we provide an overview of microarray and mas …
Genome-wide expression
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WebGene expression analysis studies can provide a snapshot of actively expressed genes and transcripts under various conditions. Next-generation sequencing (NGS) capabilities have shifted the scope of transcriptomics from the interrogation of a few genes at a time to the profiling of genome-wide gene expression levels in a single experiment. WebDec 8, 1998 · Abstract. A system of cluster analysis for genome-wide expression data from DNA microarray hybridization is described that uses standard statistical …
WebSep 16, 2007 · We executed genome-wide association scans for these traits and found peak lod scores between 3.68 and 59.1. ... Genome Medicine (2024) Expression … WebGenome-wide analysis of gene expression allows for the detection and the quantification of transcript levels for every known gene in the genome of the cell type and organism of interest. The primary use for whole-genome expression analysis is the identification of cell or tissue phenotypes as well as the discovery of novel genes or pathways ...
WebFeb 1, 2016 · Genome-wide sequence analyses revealed that higher plants contain a large group of RLKs. For example, there are about 610 and 1131 transmembrane RLKs and receptor-like cytoplasmic kinases (RLCKs) in model plants Arabidopsis and rice, respectively ( Shiu and Bleecker, 2001, Shiu et al., 2004 ). WebMar 23, 2024 · Genome-wide identification and expression profiling reveal the regulatory role of U-box E3 ubiquitin ligase genes in strawberry fruit ripening and abiotic stresses resistance ... along with significant changes in the expression levels of some ripening-related genes and the content of organic acid and soluble sugar.
Web2 days ago · The AP2/ERF transcription factor family is one of the most important gene families in plants and plays a vital role in plant abiotic stress responses. Although …
WebApr 11, 2024 · The genome-wide expression profiles of OSCA genes for different abiotic and biotic stresses and developmental stages were yielded through RNA-seq data from the Sequence Read Archive (SRA) of NCBI. charlie rice lawyerWebMar 29, 2024 · Spatial positions of cells in tissues strongly influence function, yet a high-throughput, genome-wide readout of gene expression with cellular resolution is lacking. We developed Slide-seq, a method for transferring RNA from tissue sections onto a surface covered in DNA-barcoded beads with known positions, allowing the locations of the RNA … charlie rice bristolWebApr 13, 2024 · According to our analysis, 30 OsjDIR genes have a high expression in the root, whereas only very few OsjDIR genes have the highest expression level in other … charlie rich 45catWebSep 25, 2024 · β-Ketoacyl CoA synthetase (KCS) is a key rate-limiting enzyme for the synthesis of very-long-chain fatty acids (VLCFAs) in plants that determines the synthesis … hart house restaurant reservationsWebOct 9, 2024 · Using a genome-wide association study based on a mixed linear model, we identified 7192 cis-eQTL corresponding to 2098 cis-genes (p ≤ 1.33e-3, FDR ≤ 0.05) and 6400 trans-eQTL corresponding to 863 trans-genes (p ≤ 1.13e-6, FDR ≤ 0.05). ASE analysis using RNAseq SNPs identified 9815 significant ASE-SNPs in 2253 unique genes. hart house restaurant burnaby bcWebJun 30, 2024 · This experiment uses bioinformatics analysis to identify the alfalfa LIM gene family at the genome-wide level, and further analyzes the gene structure, chromosome distribution, promoter cis-acting elements. Using qRT-PCR analyze the expression of LIM in the leaves of alfalfa at different treatment time points under salt and low-temperature … hart house reviewWebJul 11, 2024 · Genome-wide analysis of gene expression is the study of transcription at a genomic scale, also known as transcriptomics. Typically relying on data from microarrays or high throughput sequencing,... charlie rich 16 biggest hits cd